PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 412aa    MW: 46969.9 Da    PI: 4.7054
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088011.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d+++++++sws++++sf+v+++ efa  +Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +ll++
  XP_010088011.1  14 FLSKTYEMVDDPSTDSIVSWSSSNKSFIVWNPPEFAGVLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFTNEDFIRGQPHLLKN 99 
                     9**************************************************************99988.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010088011.1 100 IHRRKP 105
                     ***985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.5E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDESQGSCNS LPPFLSKTYE MVDDPSTDSI VSWSSSNKSF IVWNPPEFAG VLLPRFFKHN  60
NFSSFIRQLN TYGFRKADPE QWEFTNEDFI RGQPHLLKNI HRRKPVHSHS LQNLQGQGTP  120
QLAESERKSL KDEIERLQHD IEWLELESKR YENEQRGLEI QKHSLKECFQ NTERRQQSIV  180
SLLNQALQKR ELSMNIVPQV EAHIRKRRLP KVGYFYDGAG IKDNLIGGLE SELGEKVDSD  240
SFLNLNLDQL EQLDASLTFW EDIVSDFSQS HFQISSNIEL DESNSTGCAE SPAISYVQLN  300
VDIRPKSPDI DVNSDPVPTG ASEPAASKEQ SPKEQAIGPT PLPTGVNDVF WEQFLTENPG  360
SSDTQEVQSE RKDSDGRRNE SNPGDRSKFW WGMRNVNNIT EQMGNLTPAE RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-23910315120Heat shock factor protein 1
5d5u_B2e-23910324129Heat shock factor protein 1
5d5v_B2e-23910324129Heat shock factor protein 1
5d5v_D2e-23910324129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088011.10.0Heat stress transcription factor A-4a
SwissprotO494031e-119HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLW9R0610.0W9R061_9R
STRINGPOPTR_0011s06820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-117heat shock transcription factor A4A